Postdoc Position On Ultra-long Read Sequencing for - Zurich, Schweiz - ETH Zürich

ETH Zürich

Geprüftes Unternehmen

Zurich, Schweiz

vor 3 Wochen

Geschrieben von:

Lena Schneider

beBee Recruiter

Beschreibung

Postdoc position on ultra-long read sequencing for animal epigenomics, transcriptomics, and genomics:

100%, Zurich, fixed-term:

The Animal Genomics group within the
Institute of Agricultural Sciences at ETH Zurich investigates animal (epi-)genomes and transcriptomes.

The group applies long read sequencing to detect and characterize trait-associated sequence variation in farm animals with an emphasis on cattle.

We are looking for a motivated researcher who is eager to work on cutting-edge research projects within a young and international team.

We are looking for a researcher to join our team of doctoral, post-doctoral, and senior researchers as soon as possible.

This is a
full-time fixed term position with an anticipated start date of
August 1st, 2024 (negotiable). The position is based at ETH Zurich, Switzerland. You will join the Animal Genomics group led by Hubert Pausch.

Project background:

- more than 50 haplotype assemblies representing various breeds of taurine and indicine cattle
- long read sequencing data (HiFi & ONT) of >150 individuals. These data enable investigating structural variant diversity and methylation variation
- long read sequencing of bovine single cells
- long read-based transcript isoform quantification and analysis
- capitalizing on ultra long reads to resolve repetitive regions and assemble genomes
- and long-read sequencing technologies (Illumina, PacBio, ONT). We are committed to open and reproducible research.

Job description:

We are looking for a researcher that is eager to
- develop and implement own research ideas
- contribute to cutting-edge research projects
- support ongoing projects of doctoral students

You are responsible to develop protocols and workflows to collect
(ultra) long sequencing data from tissue and blood samples. You will be responsible to interact with our sequencing facility to ensure the protocols are robust and sequencing yields are stable.

You'll be able to acces ONT and PacBio technologies to generate data. You will be responsible for the bioinformatic analysis of the generated data.

You are encouraged to make use of the wealth of (epi-)genomic and transcriptomic data we have accumulated over the past years to develop and execute your research ideas.

Close interaction with other group members, contributing to other ongoing research projects, and establishing novel collaborations with other scientists are encouraged.

Ideally, you will pursue research interests that complement our ongoing efforts.

Active
participation in international conferences and
scientific writing are very much supported.

In general, postdoctoral researchers at ETH Zurich have a full-time employment. A part-time employment may only be considered in exceptional cases (e.g. child
- or familycare, other projects or employment).

Your profile:

Experience with workflow managers such as Snakemake, or the willingness to adopt these tools is desired.

Applicants should hold a PhD (or should be close to the completion of their PhD thesis) in disciplines that are related to the advertised position.

The writing of scientific papers and participation in international conferences requires good knowledge of English.

We offer:

ETH Zurich is a family-friendly employer with excellent working conditions. You can look forward to an exciting working environment, cultural diversity and attractive offers and benefits.

We value diversity:

In line with our values, ETH Zurich encourages an inclusive culture.

We promote equality of opportunity, value diversity and nurture a working and learning environment in which the rights and dignity of all our staff and students are respected.

Visit our Equal Opportunities and Diversity website to find out how we ensure a fair and open environment that allows everyone to grow and flourish.

Curious? So are we
:

A
motivation letter (_not more than two pages_) that demonstrates (i) your suitability for the offered position and (ii) future research questions you would like to address with (ultra) long read sequencing
A Curriculum vitae including a list of publications, complete academic record, and copies of Bachelor's, Master's and PhD degrees
Names and contact information of two references